Approaches to quantify optical coherence tomography angiography metrics
Review Article on OCT Angiography in Glaucoma

Approaches to quantify optical coherence tomography angiography metrics

Bingyao Tan1,2,3, Ralene Sim2, Jacqueline Chua2,4, Damon W. K. Wong1,2,3, Xinwen Yao1,2,3, Gerhard Garhöfer5, Doreen Schmidl5, René M. Werkmeister6, Leopold Schmetterer2,3,4,5,6,7,8,9

1Institute for Health Technologies, Nanyang Technological University, Singapore, Singapore;2Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Singapore;3SERI-NTU Advanced Ocular Engineering (STANCE) Program, Nanyang Technological University, Singapore, Singapore;4Academic Clinical Program, Duke-NUS Medical School, Singapore, Singapore;5Department of Clinical Pharmacology, 6Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria;7Yong Loo Lin School of Medicine, National University of Singapore and National University Health System, Singapore, Singapore;8Department of Ophthalmology, Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore;9Institute of Molecular and Clinical Ophthalmology, Basel, Switzerland

Contributions: (I) Conception and design: L Schmetterer, B Tan; (II) Administrative support: L Schmetterer, R Sim; (III) Provision of study materials or patients: R Sim, J Chua; (IV) Collection and assembly of data: B Tan, J Chua; (V) Data analysis and interpretation: B Tan, L Schmetterer; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors.

Correspondence to: Professor Leopold Schmetterer. 20 College Road, The Academia, Level 6, Discovery Tower, Singapore 169856, Singapore. Email:

Abstract: Optical coherence tomography (OCT) has revolutionized the field of ophthalmology in the last three decades. As an OCT extension, OCT angiography (OCTA) utilizes a fast OCT system to detect motion contrast in ocular tissue and provides a three-dimensional representation of the ocular vasculature in a non-invasive, dye-free manner. The first OCT machine equipped with OCTA function was approved by U.S. Food and Drug Administration in 2016 and now it is widely applied in clinics. To date, numerous methods have been developed to aid OCTA interpretation and quantification. In this review, we focused on the workflow of OCTA-based interpretation, beginning from the generation of the OCTA images using signal decorrelation, which we divided into intensity-based, phase-based and phasor-based methods. We further discussed methods used to address image artifacts that are commonly observed in clinical settings, to the algorithms for image enhancement, binarization, and OCTA metrics extraction. We believe a better grasp of these technical aspects of OCTA will enhance the understanding of the technology and its potential application in disease diagnosis and management. Moreover, future studies will also explore the use of ocular OCTA as a window to link ocular vasculature to the function of other organs such as the kidney and brain.

Keywords: Optical coherence tomography angiography (OCTA); ocular imaging; image processing

Submitted Apr 10, 2020. Accepted for publication Jun 16, 2020.

doi: 10.21037/atm-20-3246


The word tomogram originated from the Greek word ‘tomos’, meaning section. Optical coherence tomography (OCT) was developed based on a low-coherence interferometer, an optical imaging modality for resolving the depth-dependent backscattering signals from the biological tissues. By utilizing a scanner or a translational stage, OCT provides cross-sectional tissue structural information. OCT has evolved rapidly since its invention in 1990s (1) and has gained great success in its translation to healthcare. It is nowadays widely applied to multiple clinical fields, including dermatology, dentistry, cardiology, vascular medicine, etc. However, its main field of application is still in ophthalmology because of the layered structural characteristics and semi-transparency of the ocular tissue (2). As an OCT extension, OCT-angiography (OCTA) utilizes faster OCT systems to detect motion contrast of the biological tissue. In general, OCTA can be divided into two categories: phase-resolved Doppler OCT based on the phase difference between adjacent A-scans (3) and repeated B-scans based OCTA. These two categories have different spectra of applications, and in this review, we will only scope the OCTA generated from repeated B-scans, which we will refer to as OCTA for simplicity.

The development of OCTA over the last decade was remarkable. The concept was conceived in 2006 (4) and the first commercial device equipped with OCTA functionalities was approved by the U.S. Food and Drug Administration in 2016. It was welcomed by the rapid acceptance among clinicians due to its similarity to fluorescein angiography (FA) in non-leakage involved applications, a gold standard angiography imaging modality. Moreover, superior to FA, OCTA provides refined three-dimensional visualization of perfused blood vessels down to the capillary level in a dye-free and non-invasive manner. OCTA has provided us a better understanding of various microvascular related ocular diseases, such as diabetic retinopathy (5-10), age-related macular degeneration (11-13), glaucoma (14-17), and retinal vein occlusion (18,19). Qualitative assessment of the OCTA images might be sufficient for diagnosis of some diseases. For example, studies have shown that choroidal neovascularization was successfully diagnosed based on the existence of new pathological vessels revealed by OCTA (20,21). Quantitative OCTA metrics, on the other hand, may reveal additional subtleties about how the values from patients deviate from the healthy population distribution, helping us to better classify diseases into different severities, understand disease progression, and evaluate therapeutic performance. In this review, we will discuss some of the common issues regarding quantitative OCTA metrics, such as how to extract meaningful metrics, select the appropriate metrics and avoid pitfalls from artifacts.

OCTA signal generation from repeated OCT B-scans

The raw OCT signal acquired on the sensor is nonlinearly distributed in the spectral domain, and k-space linearization is applied to interpolate even spaced sampling in k-space. Then, applying Fourier transform converts the raw OCT signal into spatial signal providing the local depth information. The depth-resolved OCT signal is a complex value that can be expressed as:


at (x,z) positions and a specific time t, with amplitude A (x, z, t) representing the backscattering potential and phase φ (x, z, t) representing the wave propagation.

The basic idea of OCTA is to calculate the decorrelative signal between repeated B-scans (n≥2). A schematic of volumetric OCTA generation is shown in Figure 1. Since the backscattering signal from static tissues has a different temporal distribution as compared to that of moving particles like red blood cells, motion contrast using temporal signal decorrelation can differentiate the dynamic and static tissues. Based on the types of the signal used, OCTA algorithms can be divided into three categories: amplitude-based, phase-based, or phasor-based OCTA.

Figure 1 A brief flow chart of OCTA image generation. OCTA, optical coherence tomography angiography.

Amplitude-based OCTA

Amplitude based OCTA utilizes the backscattered intensity signal and is insensitive to the phase variation caused by the imaging system itself or the bulk motion from the samples. The amplitude-decorrelation (AD) method calculates the AD between adjacent frames using:


where An denotes the amplitude of the nth repeated B-scan, and N denotes the number of repeated B-scans at each position (22). Further splitting the full source spectrum into several narrower spectra and calculating the signal decorrelation within each spectrum worsens the axial resolution but demonstrates a better vessel continuity and contrast in angiograms as compared to the full spectrum AD method (23,24). This method is referred as split-spectrum amplitude-decorrelation angiography (SSADA). On the other hand, amplitude variance (AV) OCTA, proposed by Mariampillai et al. in 2008 (25), calculates the inter-frame variance based on the OCT intensity to capture the difference of the Gaussian distribution in “solids” and the Rayleigh distributions in “fluids”. Its capability of capturing capillary size down to 25 µm in an animal chamber window was demonstrated (26). Later, Liu et al. (27) combined spectroscopic OCT (SOCT) and AV OCTA to visualize the oxygen saturation in a chick embryo. SOCT and OCTA contrasts were extracted from the same channel, and SOCT was computed by oxygenated hemoglobin and deoxygenated hemoglobin difference between a longer-wavelength spectral band (880 nm) and a shorter-wavelength one (820 nm). By simply averaging the absolute amplitude difference or squared difference between adjacent tomograms, Huang et al. (28) and Blatter et al. (29) generated a retinal microvasculature map with 10 degrees and 48 degrees field of view (FOV), respectively.

Recently, Ploner and coworkers (30) developed a technique called variable interscan time analysis (VISTA) aiming at quantifying the blood flow from OCTA. A faster 400 kHz swept-source OCT was applied to acquire fast repeated B-scans with 1.5 ms interscan time. By comparing the OCTA signal from 1.5 and 3.0 ms interscan time, the authors could generate a blood flow map in a normalized scale and demonstrated its applicability in patients with various ocular diseases.

Phase-based OCTA

Phase variance (PV) OCTA is similar to AV OCTA. Instead of using the amplitude term in Eq. [2], it calculates the variance of Δφ between repeated scans, where Δφ is the phase difference between adjacent A-scans (22). A review paper has compared these two methods in detail (26). While the AV method suffers less from the system’s phase instability and has a lower computational cost, it is prone to bulk motion and projection artifacts (26). Furthermore, the statistical distribution of the phase decorrelation contains information for predicting the flow velocity. In a phantom setup using intralipid solution in a capillary, Gräfe et al. investigated the relationship between the flow velocity and the statistical properties (based on a maximum likelihood estimator or standard deviation) of the phase distribution, and reported that a normalized flow velocity can be precisely retrieved with repeated phase measurements (31). However, it is not clear what is the minimal number of repeated scans required to predict the flow velocity appropriately and how this algorithm will perform for in-vivo measurements in a clinical setting.

Phasor-based OCTA

Optical microangiography (OMAG) was introduced by Wang et al. (32) and applied to various vascular beds of the body (33-37). The OMAG algorithm migrated from analyzing the frequency components along the A-scan direction (32) to comparing the complex information between repeated B-scans (38). The calculation is achieved by averaging the absolute complex signal difference between consecutive B-scan pairs. Later, a modification combining the geometrical and arithmetic terms was proposed in order to improve the visualization of the choriocapillaris (39). Complex-signal based OMAG showed higher contrast than either amplitude or phase-based OMAG, because both amplitude and phase are sensitive to different flow rates and combining them can therefore increase the overall OCTA signal (39).

Nevertheless, phasor based OCTA is vulnerable to phase noise. For example, in swept-source OCTA, mechanical mirrors in the light source may create jitter artifacts in the spectrum sweep. Several algorithms have been developed for generating phase insensitive OCTA maps (40-43). Akinetic swept sources can sweep the spectrum via electrical tuning, making it immune to mechanical jittering, and therefore have higher phase stability (41,44,45).

Direct comparison between amplitude, phase, and phasor based OCTA algorithms is complicated, because the hardware and computational time requirements differ in different setups. For prototype systems, Gorczynska et al. (22) used a 100 kHz SSOCT system to compare the performance of AD, AV, and PV OCTA algorithms in imaging retinal and choroidal vessels. Marginal difference in retinal microvasculature was observed among these three methods, but splitting spectrum improved the vessel continuity. For the choroidal vessels, PV OCTA performed slightly better than the amplitude-based methods, while the performance was not significantly different in visualizing choriocapillaris. Poddar et al. (46) utilized a fast megahertz (MHz) Fourier Domain Mode Lock (FDML) laser to acquire OCT images from the posterior pole of human subjects and compared the PV and AV OCTA images. Results showed better delineation of choroidal vessels and choriocapillaris using PV OCTA, while the AV OCTA exhibited less signal strength with fast flow saturating the signal. For commercial systems, agreement of OCTA matrices on the retinal vasculature (47) or neovascularization (48) is weak. One of the possible reasons is that different systems may employ different processing methods in OCTA generation, vessel enhancement, segmentation, binarization, etc. Hence it is difficult to evaluate the performance of OCTA generation algorithms by analyzing the data generated from the commercial machines. More recently, some state-of-the art theories of speckle flowmetry investigated the relationship between OCT temporal decorrelation and flow rate (49). Without considering the phase fluctuation from the system, the author concluded that phasor-based decorrelation can best predict the flow velocity, whereas largest discrepancy was seen when using the amplitude-based method.

Commercial OCTA systems favor different algorithms to generate their OCTA signals. For example, AngioVue (OptoVue, Fremont, California, USA) uses an amplitude-based SSADA algorithm (50), Triton (Topcon, Japan) employs an amplitude-based OCTA ratio analysis (51), and AngioPlex (Zeiss, USA) uses a phasor-based OMAG algorithm (52).

Recently, deep learning (DL) technology has been applied in the biomedical imaging field, and some groups have attempted to generate OCTA images via DL. For example, Lee et al. (53) tried to generate retinal OCTA images from the single acquisition of clinically available OCT images by transferring a trained U-Net, but results were not satisfactory and only large vessels could be successfully reproduced. Liu et al. (54) applied convolutional neural networks to generate OCTA images from four repeated scans, and the ground truth was generated from a phasor based OCTA algorithm (55). They concluded that the OCTA map generated from DL algorithm has a better signal to noise ratio (SNR) and lower speckle noise than the traditional method. With the rapid evolution of new DL networks, such as the generative adversarial network (GAN), there will be more implementation of DL algorithms in OCTA calculation in the near future.

Methods for artifact removal in OCTA

OCTA artifacts originate from multiple sources, such as bulk motion, vessel projections, laser beam blockage due to eyelashes or cataracts, and segmentation errors (56-60). They are common in acquisition and can affect quantification of OCTA metrics as well as clinical diagnosis. Thus, it’s important to develop algorithms that suppress or remove artifacts for improving the performance of OCTA in clinical applications.

Motion artifacts during image acquisition are unavoidable, and it comes from voluntary or involuntary eye motion, cardiac motion or head motion. It leads to vessel breaks, doubling, or stretching, and consequently affects OCTA quantification. Reducing motion artifacts can generally be done by increasing the acquisition speed, implementing a retina tracker, or by redesigning special scanning patterns. MHz OCT with a FDML laser can increase the acquisition speed by a factor of 16× as compared to commercial systems (61,62), so that motion artifacts can be greatly reduced given a short acquisition time. However, FDML lasers are expensive and MHz OCT systems can still be sensitive to fast saccades. Retinal trackers, such as the line-scan ophthalmoscope or scanning laser ophthalmoscope, detect the motion in real-time and send feedback to scanners to adjust the scanning region and suspend scanning during saccades. The drawback is the longer acquisition time especially for patients with fixation problems and high system complexity. Lastly, some special scanning patterns were designed to reconstruct motionless volumes from post-processing, such as x-y scans (63) and Lissajous scans (64), which require longer acquisition time and higher computational cost for image reconstruction. Figure 2A shows an example comparing the enface OCTA images acquired from a 3 mm × 3 mm retinal image with and without the use of the eye tracker.

Figure 2 Representative examples of artifacts in OCTA. (A) A macular scan was imaged with/without active eye tracking. Without tracking, complete absence of the signal or breaks within the vessels were induced by eye motion including blinking and saccades, respectively. (B) Deep capillary plexus (DCP) visualization can be affected by the projection of vessels from its superficial vessel plexus (SVP). A projection removal algorithm by subtracting SVP from DCP can resolve the projection artifact and restore the proper visualization of DCP. (C) Low signal area from an unknown blockage origin can confound the real capillary dropout area from OCTA images, but the blockage can also result in a signal loss in their corresponding OCT images. Borrowing the structural information may help to differentiate signal loss area from capillary dropout. (D) Segmentation error occurs more frequently in high myopic eyes with a strong curvature and high optical aberration in periphery. Misinterpretation of the capillary loss can occur when not confirming the segmentation accuracy. OCTA, optical coherence tomography angiography.

Superficial vessels can project shadows onto deeper vascular plexuses, which are called projection artifacts or tail artifacts. Dynamic scattering potential in blood vessels affects the number of photons and wavefront reaching the deeper tissue, and consequently change the strength of the decorrelative signals from the deeper tissue. This effect is more severe for large vessels with a high flow rate as shown in Figure 2B. Bernucci et al. injected a contrast agent with isotropic scattering (fat emulsion dietary) intravenously to enhance the OCTA signal, and no significant change of the projection artifact was observed (65). This indicated that the projection artifact is partially due to the dumbbell shape of the red blood cell. To overcome the projection artifact, one could use adaptive optics (AO) with better focusing (66,67) or post-processing algorithms: A step-down exponential filter (68) was used to remove projection artifacts from OCTA cross-sectional scans in brains of rats. Moreover, projection artifacts in deeper enface angiograms can be removed by subtracting the signal from the superficial angiograms (69,70), or comparing the OCTA signal from A-scans (17,71). Projection resolved images provided better visualization of the deeper retinal layers and the choroids, as well as the vasculatures in these layers (70,72,73).

Low image contrast is encountered in subjects with cataracts, eyelash blockage or high myopia (Figure 2C). Low contrast can be global or regional, especially for large FOV images. Optical vignetting creates an uneven illumination of the retina, making the center bright and the periphery dark. Moreover, strong curvature of high myopic eyes can result in retina wrapped by the image range (74). Hence, correctly differentiating the low contrast regions from pathological capillary dropout is crucial for diagnosing vascular insufficiency in diseases such as diabetic retinopathy. De Pretto et al. (75). used spatial variance filter and OCT contrast thresholding to differentiate the artifacts from real capillary dropout. The implementation of a DL algorithm was also investigated for the same task from the corresponding structural image (76).

Segmentation error is probably the most important artifact in OCTA (Figure 2D). OCT image quality is easily deteriorated by speckle noise, and retinal layers have limited boundary contrast. Numerous segmentation algorithms, in both automatic and semi-automatic manners, have been developed, including k-nearest mean (77), graph cut (78), graph theory (63,79), Markov boundary model (80), active contour (81,82), texture and shape analysis (83,84), 3-D theoretical representation fitting (85), and sparse high order potentials (86). Dubose et al. (87) modeled statistical intensity distribution of the retinal layers and used Cramèr-Rao lower bound to explain the limitation of traditional retinal layer segmentation. Recently developed retinal layer segmentation algorithms have been heavily influenced by machine learning (ML) concepts. Various ML methods including support vector machine (88), random forest (89), neural network (90), and DL architectures were applied to retinal segmentation in healthy and diseased eyes (91-101). De Fauw and coworkers (102) were able to provide precise segmentation of multiple pathological sites after training on 14,884 scans. Nevertheless, it is still challenging to transfer the ML-based segmentation into OCTA in a clinical setting. It is difficult to transfer trained models from one machine to another, and for some pathologies such as neovascularization, training datasets are simply insufficient.

OCTA metrics algorithms

Numerous methods have been developed and investigated for extracting quantitative metrics from OCTA images. OCTA processing is still in its infant stage and so far there has been no consensus of the standard processing framework, which complicates the comparisons of the reported results. The problem is exacerbated by the interference between different factors, so one cannot simply conclude the performance of one factor without considering the subtle effect of the others. Here, we list out these influences and discuss how they can potentially affect the OCTA quantifications.

Vessel enhancement algorithms

Retinal vessel network in healthy human eyes can usually be divided into several plexuses, each of them almost parallel to the retinal surface. Vertical anastomoses link the entrances and exits of each plexus to form a closed-loop network. Therefore, enface angiograms in each plexus can be analyzed individually. Prior to the quantification, some vessel enhancement filters are usually applied to increase the angiogram SNR. The Frangi filter approach (103) is widely applied to enhance the tube-like properties in images by using second-order derivative of the image intensity. However, its performance is strongly dependent on the presence of vessels of different sizes (scales) in the same image. Gabor filter is a vessel enhancement algorithm based on the determination of orientations within the image. It detects the local image orientation by convoluting the image with Gabor kernels and Hendargo et al. (104) used it to increase the efficiency of angiogram mosaic stitching. Alternative filters include weighted symmetry filter (105), active shape models (106), vessel enhancement diffusion (107) and local phase-based filter (108). Wavelet decomposition (109) and modified Bayesian residual transform (MBRT) (110) decompose the image into multiple residual images, where each residual image represents information at a unique scale. Both methods could simultaneously reduce speckle noise and enhance the contrast of vessels. Figure 3 shows examples of applying representative vessel enhancement filters (Frangi, Gaussian, Gabor, Bayesian and superpixel) to two 3 mm × 3 mm macular scans, one from a healthy eye and the other from an eye with moderate diabetic retinopathy. Vessels appeared significantly different with various filters, and consequently perfusion density results range from 40.4% to 62.0% in the healthy eye and 38.1% to 61.8% in the diabetic retinopathy eye, using mean grayscale intensity as a threshold for binarization. There is as yet no agreement on which filter best suits OCTA analysis. Hong et al. tested the repeatability of OCTA metrics with multiple filters (Gaussian, Gabor, Frangi, and MBRT) in an aged population. The performance of different filters varies in 3 mm × 3 mm and 12 mm × 12 mm protocols: Gabor and MBRT filters yielded the best performances in 3 mm × 3 mm and 12 mm × 12 mm protocols, respectively (111).

Figure 3 Effect of different representative vessel enhancement filters on OCTA image from one healthy eye and one eye with moderate diabetic retinopathy. Visualization of OCTA images can be substantially altered by different filters and parameters, and consequently the perfusion density can range from 40.4% to 62.0% in the healthy eye and 38.1% to 61.8% in the diabetic retinopathy eye using the mean grayscale intensity as threshold. MBRT, modified Bayesian residual transform. OCTA, optical coherence tomography angiography.

Averaging over multiple scans might be the most straightforward method to reduce image speckle and increase SNR. Pulsatile flow and pericyte constriction can cause a heterogeneous blood vessel lumen appearance and averaging multiple frames can reduce this unevenness. Although averaging phasor images lead to better results than averaging amplitude image (112), it is computationally expensive and such post-processing is impractical to deal with images from commercial systems because of the limited access to the raw data. Uji et al. (113) showed that averaging nine scans greatly improves the visualization of retinal vessels and better delineates the boundary of the fovea avascular zone (FAZ). Mo et al. (114) observed a better correlation between AO scanning laser ophthalmoscope FA and OCTA when multiple enface images were registered and averaged. OCTA images of choriocapillaris also benefit from averaging. High lateral resolution and sampling are required to visualize choriocapillaris, and averaging multiple frames can substantially increase their visibility (113,115). However, the drawback is the longer acquisition time which leads to the low tolerability for patients with poor fixation or physical difficulties. One study examined the relationship between the number of averaged frames and quantification of retinal vessel metrics using a commercial system and concluded that five scans were optimal to balance the acquisition time and image robustness (116). Using another machine (PlexElite 9000, Zeiss), we performed ten repeated measurements and examined the performance of averaging (unpublished data, Figure 4). Here, averaging three images seemed visually comparable to averaging ten images to balance the retinal vessel unevenness and generate an anatomically reasonable choriocapillaris pattern. Moreover, it is worth noting that scan quality consistency and precise registration algorithms are critical to avoid signal degradation.

Figure 4 Effect of multiple enface image averaging on visualization of retinal and choriocapillaris OCTA images. Averaging multiple frames increases the image signal and reduces background noise but averaging 10 frames has marginal improvement as compared to averaging 3 frames. Moreover, the improvement is greater in choriocapillaris plexus where the original signal to noise ratio is low. Red arrows indicate the locations where averaging caused changes in vessel appearance. OCTA, optical coherence tomography angiography.

Selection of thresholding method is also critical for correct OCTA interpretation. The thresholding methods can be divided into two categories: global methods and local or regional methods. Global thresholding includes Otsu’s histogram adaptive thresholding (117) and mean/standard deviation thresholding. Otsu methods try to separate the foreground and background by adaptively selecting a local minimum in the histogram to be the threshold, and the mean/standard deviation method sets a fixed value, e.g., mean + standard deviation, to be the threshold. Local or regional thresholding methods such as Phansalkar (118), Niblack (119), and Sauvola (120), use different types of local information to binarize images. Both types of methods have their advantages and disadvantages. For instance, local thresholding methods tackle the uneven illuminance in images, but the drawback is the need to tune the kernel size. One example is over-segmenting the noise in the FAZ (121) with a small kernel radius. Furthermore, noise present in the OCTA images, especially in the low signal regions such as choriocapillaris can easily cause misinterpretation if thresholding is not done properly. For careful interpretation of the perfusion readings, the binarized images must be assessed alongside the OCTA images (122).

Vessel selectivity algorithms allow for the analysis of large vessels and capillaries separately. For several diseases such as glaucoma (123), diabetic retinopathy (6,124), ischemic optic neuropathy (125,126) and Alzheimer’s disease (127) where capillaries are more affected, separating the large vessels from capillaries could bring extra diagnostic power as compared to combining them. Vessel selectivity can be simply done by thresholding the angiograms and applying some morphology operators, and some aforementioned vessel enhancement filters can also be applied prior to the thresholding. However, the vessel selectivity algorithm is not perfect yet, and the selection standard usually differs from the anatomical definitions, such as vessel branch order.


Traditional quantitative metrics for OCTA analysis are perfusion density and vessel density. The perfusion density is calculated as the ratio of the binarized perfusion area to the entire imaged area. Vessel density is based on the skeletonized vessel map, using a one-pixel line to represent the vessel, as such excluding the effect of the vessel diameter. It is calculated as the ratio of vessel area to the entire imaged area.

There are also some other proposed metrics such as fractal dimension (8,128) and complexity index (129), but they are less intuitive and more computationally costly. Because of the heterogeneous nature of the parafoveal vessels (130), perfusion and vessel densities were sometimes calculated separately in four quadrants. For example, as shown in Figure 5, an annulus with inner ring diameter 1 mm and outer ring diameter 2.5 mm was evenly separated into superior, inferior, temporal and nasal quadrants.

Figure 5 Illustration of a possible analysis of a macular OCTA image. Quadrant analysis (superior, inferior, nasal, temporal) on an annulus is shown in the upper row and FAZ annulus analysis based on manual FAZ delineation is depicted in the lower row. OCTA, optical coherence tomography angiography; FAZ, fovea avascular zone.

For choriocapillaris, instead of calculating the area of perfusion, researchers used the non-perfused area for analysis with some binarization approaches. These non-perfused regions, based on individual preference, are called flow voids, flow deficits or signal voids. The total non-perfused region usually reflects the global change in the imaged area due to systemic diseases, such as hypertension (73), and sizes of individual non-perfused regions can represent the local change due to more focal pathology, such as drusen (131).

Magnification is an important factor to consider. The actual FOV Sactual can be modeled as a function of axial eye length:

Sactual=p · q · Sprotocol[3]

where Sprotocol is the FOV of scanning protocol, p is the magnification factor of the machine optics, and q is the magnification factor of the eye which has been expressed as 0.01306 · (AL−1.82) with AL representing the axial eye length and 1.82 is the distance between the corneal apex and the second principal plane in mm (132). Whether this formula is, however, truly correcting all magnification errors remains unproven. Magnification can affect how much FAZ is included in the calculation and also perfusion density because perfusion decreases along with eccentricity (133), which can further affect the quantification of OCTA images especially in highly myopic eyes with long axial eye length (134,135). A systematic review revealed only 8% of 509 articles correctly rescale the imaging area (136). A lack of axial eye measurement might be the reason and, in this case, the FAZ annulus method might be a more appropriate approach to mitigate the influence of FAZ. An example is shown in Figure 5, where the FAZ was manually delineated and its 500 µm and 1,000 µm thick annulus were defined for regional OCTA quantification. Nevertheless, this method could be labor-intensive due to the manual delineation of FAZ.

OCTA metrics can be significantly affected by many other factors, such as lateral resolution, sampling rate, system speed and scan direction. Different lateral resolutions and sampling rates from clinical machines gave dissimilar qualitative and quantitative OCTA results (48). AO OCTA is a new technology to correct the ocular aberration and achieve diffraction limited lateral resolution by utilizing deformable mirrors, and capillaries in AO-OCTA images appeared to be narrower and consequently yielded lower perfusion density compared to that imaged without AO (66,114,137,138). In addition, increasing the sampling density has a substantial effect on the OCTA visualization and quantification (139), changing the sampling rate post-processing can significantly alter the choriocapillaris size (140) and retinal perfusion density (141). Different sampling densities using the same machine (PlexElite 9000, Zeiss, USA) resulted in disagreement of perfusion and vessel density calculation and performed differently in diagnosing diabetic retinopathy (142). Imaging speed, including A-scan and B-scan speed, also contribute to the OCTA signal. The time interval between repeated B-scans is sensitive to the blood flow in a specific range (30,143). Due to the large variation of blood flow rate in retinal and choroidal vessels, different systems may advance in detecting either one of them: faster systems, in general, have shorter interscan time interval, which are more sensitive to faster flow and the converse is also true. For example, a 1.7-MHz FDML laser is 17× faster than most lasers that are used in commercial machines. Using such a laser as light source could substantially reduce the interscan time and consequently improve the visualization of the fast flow such as choriocapillaris and choroid, but conversely compromised the detection of slow flow velocities as, for example in foveal capillaries adjacent to the FAZ (144). Last but not least, the scan direction is another factor influencing the OCTA signal that is not sufficiently taken into account. First, the OCTA signal is most sensitive to the flow perpendicular to the fast scanning direction. Changing the scan direction will result in being sensitive the flow from a different angle (145). Second, the motion artifacts are usually along the slow scan axis, which might consequently alter the OCTA image appearance. Generally speaking, quantification of OCTA metrics can be affected by a myriad of factors, which can influence the outcome and the results will need to be reported alongside detailed method description. Comparisons are complicated among commercial machines using different parameters and methods.

In summary, OCTA can reveal the three-dimensional retinal and choroidal vascular network with unprecedented resolution and speed. Although OCTA machines have been commercialized by several companies and the technology has been translated to clinics, research is still ongoing to find optimized solutions for interpreting and quantifying OCTA images. Novel approaches are directed towards the quantification of blood flow rate from OCTA, which is important for understanding local or global perfusion changes as well as vascular dysregulation prior to the morphological change in microvasculature, but no solution for this problem has been found as yet. Whereas OCTA has been extensively studies for ocular disease, future studies will also explore the use of ocular OCTA as a window to link ocular vasculature to the function of other organs such as the kidney and brain. To find clinically relevant association selection of an optimized quantification algorithm is crucial.


Funding: The study is funded by National Medical Research Council (grants CG/C010A/2017, OFIRG/0048/2017, OFLCG/004c/2018, and TA/MOH-000249-00/2018), the Duke-NUS Medical School [Duke-NUS-KP(Coll)/2018/0009A], Singapore and the Austrian Science Fund (KLIF529). The sponsor or funding organization had no role in the design or conduct of this research.


Provenance and Peer Review: This article was commissioned by the Guest Editor (Dr. Gabor Hollo) for the series “OCT Angiography in Glaucoma” published in Annals of Translational Medicine. The article was sent for external peer review organized by the Guest Editor and the editorial office.

Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at The series “OCT Angiography in Glaucoma” was commissioned by the editorial office without any funding or sponsorship. The authors have no other conflicts of interest to declare.

Ethical Statement: The authors are accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved.

Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See:


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Cite this article as: Tan B, Sim R, Chua J, Wong DWK, Yao X, Garhöfer G, Schmidl D, Werkmeister RM, Schmetterer L. Approaches to quantify optical coherence tomography angiography metrics. Ann Transl Med 2020;8(18):1205. doi: 10.21037/atm-20-3246

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